Thomas Pfeiffer Research Group
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​Publications

​Prof. Thomas Pfeiffer

  1. Gordon M, Viganola D, Bishop M, Chen Y, Dreber A, Goldfedder B, Holzmeister F, Johannesson M, Liu Y, Twardy C, Wang J, and Pfeiffer T. Are replication rates the same across academic fields? Community forecasts from the DARPA SCORE programme. R. Soc. Open Sci. (2020) 7200566.
  2. Ebersole C, …, Nosek BA. Many Labs 5: Testing pre-data collection peer review as an intervention to increase replicability. Advances in Methods and Practices in Psychological Science (2020) in press.
  3. Tierney W, Hardy J, Ebersole C, Leavitt K, Viganola D, Clemente E, Gordon M, Dreber A, Johannesson M, Pfeiffer T, Hiring Decisions Forecasting Collaboration, Uhlmann E. Creative destruction in science. Organizational Behavior and Human Decision Processes 161 (2020) 291-309.
  4. Tierney W, Ebersole C, Hardy J, Clemente E, Viganola D, Gordon M, Dreber A, Johannesson M, Pfeiffer T, Chapman H, Gantman A, Vanaman M, DeMarree K, Igou E, Wylie J, Storbeck J, Andreychik MR, McPhetres, J, Vaughn LA, Work Morality Forecasting Collaboration, Uhlmann EL. A creative destruction approach to replication: Implicit work and sex morality across cultures. Journal of Experimental Social Psychology (2020) in press.
  5. Landy JF, Jia M, Ding I L, Viganola D, Tierney W, Dreber A, Johanneson M, Pfeiffer T, …, Uhlmann EL. Crowdsourcing hypothesis tests: Making transparent how design choices shape research results. Psychological Bulletin, 146 (2020): 451-479.
  6. Forsell E, Viganola D, Pfeiffer T, Almenberg J, Wilson B, Chen Y, Nosek BA, Johannesson M, Dreber A. Predicting replication outcomes in the Many Labs 2 study. Journal of Economic Psychology 75 (2019) 102117.
  7. Camerer C, Dreber A, Holzmeister F, Ho T, Huber J, Johannesson M, Kirchler M, Nave G, Nosek B, Pfeiffer T, Altmejd A, Buttrick N, Chan T, Chen Y,  Forsell E, Gampa A, Heikensten E, Hummer L, Taisuke I, Isaksson S, Manfredi D, Rose J, Wagenmakers EJ, Wu H. Evaluating the Replicability of Social Science Experiments in Nature and Science. Nature Human Behaviour 2 (2018) 637-644
  8. Eitan O, Viganola D, Inbar Y, Dreber A, Johannesson M, Pfeiffer T, Thau S, Uhlmann E. Is research in social psychology politically biased? Systematic empirical tests and a forecasting survey to address the controversy. Journal of Experimental Social Psychology 79 (2018) 188-199
  9. D Viganola, O Eitan, Y Inbar, A Dreber, M Johannesson, T Pfeiffer, S Thau, ... Datasets from a research project examining the role of politics in social psychological research Scientific data 5 (2018), 1-9.
  10. Camerer CF, Dreber A, Forsell E, Ho T, Huber J, Johannesson M, Kirchler M, Almenberg J, Altmejd A, Chan T, Heikensten E, Holzmeister F, Imai T, Isaksson S, Nave G, Pfeiffer T, Razen M, Wu H Evaluating replicability of laboratory experiments in economics. Science 351 (2016) 1433-1436
  11. Widder S, Allen R, Pfeiffer T, Curtis TP, Wiuf C, Sloan WT, Cordero OX, Brown SP, Momeni B, Shou W, Kettle H, Flint HJ, Haas AF, Laroche B, Kreft JU, Rainey PB, Freilich S, Schuster S, Milferstedt K, van der Meer JR, Groβkopf T, Huisman J, Free A, Picioreanu C, Quince C, Klapper I, Labarthe S, Smets BF, Wang H, Isaac Newton Institute Fellows, Soyer OS. Challenges in microbial ecology: building predictive understanding of community function and dynamics. ISME J (2016) 10.1038/ismej.2016.45.
  12. *Dreber A, *Pfeiffer T, Almenberg J,  Isaksson S, Wilson B,  Chen Y, Nosek B, Johannesson M. (2015) Using prediction markets to estimate the reproducibility of scientific research. PNAS (2015) doi/10.1073/pnas.1516179112
  13. *Munafo M, *Pfeiffer T, Altmejd A, Heikensten E, Almenberg J, Bird A, Chen Y, Wilson B,  Johannesson M,  Dreber A. (2015) Using Prediction Markets to Forecast Research Evaluations. R Soc Open Science 2 (2015) 150287.
  14. Pfeiffer, T., & Morley, A. An evolutionary perspective on the Crabtree effect. Front Mol Biosci 1 (2014) 17. doi:10.3389/fmolb.2014.00017
  15. Okeke, I. N., Manning, R. S., & Pfeiffer, T. Diagnostic schemes for reducing epidemic size of african viral hemorrhagic fever outbreaks. Journal of Infection in Developing Countries 8 (2014) 1148-1159. doi:10.3855/jidc.4636
  16. Pfeiffer T, Tran L, Krumme C, Rand DG. The value of reputation. Proc R Soc Interface 9 (2012) 2791.
  17. Evangelou E, Siontis KCM, Pfeiffer T, Ioannidis JPA. Perceived information gain from randomized trials correlates with publication in high impact factor journals. J Clinical Epidemiology 65 (2012) 1274-81.
  18. Pfeiffer T, Gao A, Mao A, Chen Y, Rand DG. Adaptive Information Polling and Aggregation. Proc. of the 26th Conference on Artificial Intelligence - AAAI (2012).
  19. Pfeiffer T, Bertram L, Ioannidis JPA. Quantifying Selective Reporting and the Proteus Phenomenon for Multiple Datasets with Similar Bias. PLoS ONE 6 (2011) e18362.
  20. Pfeiffer T, Almenberg J. Prediction markets and their potential role in biomedical research - a review. Biosystems 102 (2010) 71-6.
  21. Soyer OS, Pfeiffer T. Evolution under fluctuating environments explains observed robustness in metabolic networks. PLoS Comp Biol 6 (2010) e1000907.
  22. Almenberg J, Kittlitz K, Pfeiffer T. An experiment on prediction markets in science. PLoS ONE 4 (2009) e8500.
  23. Rand DG, Pfeiffer T. Systematic differences in citation count across publication tracks at PNAS. PLoS ONE 4 (2009) e8092.
  24. Rutte C, Pfeiffer T. Evolution of reciprocal altruism by copying of observed behavior. Current Science 97 (2009) 1573-78.
  25. Pfeiffer T, Hoffmann R. Large-Scale Assessment of the Effect of Popularity on the Reliability of Research. PLoS ONE 6 (2009) e5996.
  26. Novak M, Pfeiffer T, Ackermann M, Bonhoeffer S. Bacterial growth properties at low optical densities. Antonie Van Leeuwenhoek 96 (2009) 267-74.
  27. Rand DG, Pfeiffer T, Dreber A, Sheketoff R, Wernerfelt N, Benkler Y. Dynamic remodeling of in-group bias during the 2008 presidential election. PNAS 106 (2009) 6187-91.
  28. Pfeiffer T, Rand DG, Dreber A. Decision-making in research tasks with sequential testing. PLoS ONE 4 (2009) e4607.
  29. Schuster S, Kreft J-U, Schroeter A, Pfeiffer T. Use of game-theoretical methods in biochemistry and biophysics. J Biol Phys. 34 (2008) 1-17.
  30. Schuster S, Pfeiffer T, Fell DA. Is maximization of molar yield in metabolic networks a universal principle? J Theor Biol. 252 (2008) 497-504.
  31. Pfeiffer T, Hoffmann R. Temporal patterns of genes in scientific publications. PNAS 104 (2007) 12052-6.
  32. Steiner UK, Pfeiffer T. Optimizing time and resource allocation trade-offs for investment in morphological and behavioral defense. Am Nat. 169 (2007) 118-29.
  33. Pfeiffer T, Nowak MA. Digital Cows grazing on Digital Grounds. Current Biology (Essay) 22 (2006) R946-9
  34. Pfeiffer T, Nowak MA. All in the game. Nature (News & Views). 441 (2006) 583-584.
  35. Novak M, Pfeiffer T, Lenski RE, Sauer U, Bonhoeffer S. Experimental evidence for an evolutionary trade-off between growth rate and yield in E. coli. Am Nat. 168 (2006) 242-251.
  36. Soyer OS, Pfeiffer T, Bonhoeffer S. Simulating the evolution of signal transduction networks. J Theor Biol. 241 (2006) 223-232.
  37. Pfeiffer T, Soyer OS, Bonhoeffer S. Evolution of connectivity in metabolic networks. PLoS Biol. 3 (2005) e228.
  38. Pfeiffer T, Rutte C, Killingback T, Taborsky M, Bonhoeffer S. Evolution of cooperation by generalized reciprocity. Proc Biol Sci. 272 (2005) 1115-1120.
  39. Pfeiffer T, Schuster S. Game-theoretical approaches to studying the evolution of biochemical systems. Trends Biochem Sci. 30 (2005) 20-25.
  40. Pfeiffer T, Bonhoeffer S. Evolution of crossfeeding in microbial populations. Am Nat. 163 (2004) E126-135.
  41. Pfeiffer T. Trade-offs in the energy production of heterotrophs and their evolutionary consequences. Diss. ETH No. 15200 (2003).
  42. Pfeiffer T, Bonhoeffer S. An evolutionary scenario for the transition to undifferentiated multicellularity. PNAS 100 (2003) 1095-1098.
  43. Schuster S, Klamt S, Weckwerth W, Moldenhauer F, Pfeiffer T. Use of network analysis of metabolic systems in bioengineering. Bioprocess Biosyst Eng. 24 (2002) 363-372.
  44. Pfeiffer T, Bonhoeffer S. Evolutionary consequences of tradeoffs between yield and rate of ATP production. Z Phys Chem. 216 (2002) 51-63.
  45. Schuster S, Pfeiffer T, Moldenhauer F, Koch I, Dandekar T. Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniae. Bioinformatics 18 (2002) 351-361.
  46. Pfeiffer T, Schuster S, Bonhoeffer S, Cooperation and competition in the evolution of ATP-producing pathways. Science 292 (2001) 504-507.
  47. Pfeiffer T, Dandekar T, Moldenhauer F, Schuster S. Topological Analysis of Metabolic Networks. Application to the Metabolism of Mycoplasma pneumoniae. In: BioThermoKinetics 2000. Animating the Cellular Map, Stellenbosch University Press, Stellenbosch (2000) 229-234.
  48. Schuster S, Pfeiffer T, Moldenhauer F, Koch I, Dandekar T. Structural Analysis of Metabolic Networks: Elementary Flux Modes, Analogy to Petri Nets, and Application to Mycoplasma pneumoniae. In: Proceedings of the German Conference on Bioinformatics,  Logos Verlag, Berlin (2000) 115-120.
  49. Pfeiffer T. Theoretische Untersuchungen zur strukturellen Charakterisierung enzymatischer Reaktionssysteme. Diplomarbeit, HU Berlin (1999).
  50. Pfeiffer T, Sanchez-Valdenebro I, Nuno JC, Montero F, Schuster S. METATOOL: for studying metabolic networks. Bioinformatics 15 (1999) 251-257.
  51. Schuster S, Fell DA, Pfeiffer T, Dandekar T and Bork P: Elementary Modes Analysis Illustrated with Human Red Cell Metabolism. In: BioThermoKinetics in the Post Genomic Era, Chalmers, Göteborg (1998) 332-339.
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